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Making PDFs Searchable
I make use of the advanced search feature in Zotereo frequently, which enables searching through manuscript PDFs. However, when you obtain manuscript PDF files from online databases, they may not be in a searchable format.
Greydon Gilmore
Adding application launch icon to favorites
Download your own icon image Find path to the executable of your application by running (replace brackets with name of applicaion): which [name_application] Copy the path from this output.
Greydon Gilmore
ANTs (Advanced Normalization Tools) Install
Get the latest ANTs code You will need to install the ZLIB libraries: sudo apt install zlib1g-dev Obtain the newest version of ANTs by running the following: mkdir -p ~/Documents/code/ants_source cd ~/Documents/code/ants_source git clone https://github.
Greydon Gilmore
SSHFS Desktop Application
Setup fuse Run the following in a terminal: modprobe fuse Create a FUSE usergroup and add yourself to the group sudo groupadd fuse sudo usermod -a -G fuse $USER Create a set of ssh-keys, press enter when asked to name the file (blank) and press enter when asked to enter a passphrase (blank):
Greydon Gilmore
NiftyReg Install
Download NiftyReg Obtain the newest version of NiftyReg or by running the following: mkdir -p ~/Documents/code/niftyreg_source cd ~/Documents/code/niftyreg_source git clone https://github.com/SuperElastix/niftyreg.git . Run CMake/Make Make the build directory. The default install location is /usr/local, which falls on your PATH.
Greydon Gilmore
FSL (FMRIB Software Library) Install
Installing on Pop_OS! You will first need to run the following steps prior to installing FSL. The following steps were originally written here here . Make sure you run a backup prior to performing this hack… just in case.
Greydon Gilmore
Google Remote Desktop
Install Remote Desktop Extension 1. Navigate to Chrome Remote Desktop Web Store and install it by clicking Add to Chrome. 2. Click Launch App and the remote desktop app window should open.
Greydon Gilmore
Tips on reading academic papers
One frequently asked question amoung graduate students is “How do you organize/read manuscripts?”. I have found a workflow that works quite well and allows me to stay ontop of the endless amount of new publications.
Greydon Gilmore
ART (Automatic Registration Toolbox) Install
Download ART Download the newest version of ART Make a new directory for the install and extract the tar package into it: mkdir ~/Applications/ART cd ~/Applications/ART tar -xvzf /mnt/c/Users/*[your_username]*/Downloads/acpcdetect2.0*.tar.gz Post Configuration Set the ARTHOME environment variable and add the binary directory to your PATH by editing your ~/.
Greydon Gilmore
Github desktop Install
While working with Git is most often performed at the command line, it can often be daughnting for people who are not as comfortable with a terminal window. GitHub has made the entry point easier by introducing a user interface application - GitHub Desktop.
Greydon Gilmore
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